HWRS 696F.

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Topics & readings

All 77 entries in the course archive, tagged and filterable.

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Modeling task

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Topic 00Weeks 01–02

Introduction

Models are descriptions encoded using language

Presenting Hoshin Gupta

9 primary3 supporting

A model is a description — an ordered set of descriptors built from a finite but extensible alphabet. So are data, and so are metrics. Descriptions are encodings that must be decoded, they reflect representational choices, and effective description is compression. Large language models are generative models of exactly such languages, and agents are built from them. That chain of reasoning sets up the rest of the semester.

PrimaryPaper

On generalization, language, interpretability and the future of geo-scientific machine learning

Gupta, H. V. (2025) · Invited Opinion, EnviroFutures Series, Environmental Modelling & Software

PrimaryPaper

Deep learning can facilitate physically interpretable geoscientific modelling

Gupta, H. V. (2026) · News & Views, Nature Water

PrimarySlides

L01-M01 · What is a System?

Gupta, H. V. · HWRS 428/528 lecture · 21 slides

PrimarySlides

L01-M02 · What is a Model?

Gupta, H. V. · HWRS 428/528 lecture · 28 slides

PrimarySlides

L02-M03 · Stages in Model Development

Gupta, H. V. · HWRS 428/528 lecture · 13 slides

PrimarySlides

L02-M04 · Main Scientific Hypotheses Encoded in a PB-DESM

Gupta, H. V. · HWRS 428/528 lecture · 34 slides

PrimarySlides

L03-M05 · The Basic Reservoir Model

Gupta, H. V. · HWRS 428/528 lecture · 16 slides

PrimarySlides

L03-M06 · Language & Definitions

Gupta, H. V. · HWRS 428/528 lecture · 4 slides

PrimaryVideo

Accelerating Scientific Discovery with Agentic AI

Wu, J. (2025) · Talk · 30 min

SupportingVideo

AI has hacked the code of human civilization

Harari, Y. N. (2026) · Talk · 47 min

SupportingVideo

Claude Skills Built Me an AI Agent Army (They Run Everything Now)

Isenberg, G. (2026) · Talk · 33 min

SupportingVideo

Agentic Coding for Scientists

Matsen, E. (2025) · Talk · December 2025 edition

Topic 01Week 02

Generalization, Language, Interpretability & the Future

What role does hydrological science have in the age of machine learning?

Presenting Jack & Chloe

3 primary6 supporting

The long-running debate over what theory buys us once data-driven models outperform our equations — framed here through information theory, hypothesis testing, and the difference between reducing uncertainty and gaining information.

PrimaryPaper

On generalization, language, interpretability and the future of geo-scientific machine learning

Gupta, H. V. (2025) · Invited Opinion, EnviroFutures Series, Environmental Modelling & Software

PrimaryPaper

What role does hydrological science play in the age of machine learning?

Nearing, G. S. et al. (2020) · Water Resources Research

PrimaryNotes

Executive summary of Nearing et al. (2020)

Gupta, H. V. (2020) · HVG reading note

SupportingPaper

Does information theory provide a new paradigm for Earth science?

Kumar, P. & Gupta, H. V. (2020) · WRR, Debates on Information Theory

SupportingPaper

Does information theory provide a new paradigm for Earth science? Hypothesis testing

Nearing, G. S. et al. (2020) · WRR, Debates on Information Theory

SupportingPaper

Does information theory provide a new paradigm for Earth science? Sharper predictions using Occam's digital razor

Weijs, S. V. & Ruddell, B. L. (2020) · WRR, Debates on Information Theory

SupportingPaper

Information vs. uncertainty as a foundation for science

Nearing, G. S. & Gupta, H. V. (2018) · arXiv:1704.07512

SupportingPaper

Ensembles vs. information theory: supporting science under uncertainty

Nearing, G. S. & Gupta, H. V. (2018) · Frontiers of Earth Science

SupportingPaper

Using models and data to learn: a systems theoretic perspective on the future of hydrological science

Gupta, H. V. & Nearing, G. S. (2014) · Invited Commentary, Water Resources Research

Topic 02Week 03

Use of Intelligent Agents in Geo-Scientific Modeling

Where in the modeling workflow can an agent actually help?

Presenting Maria & Anik

7 primary2 supporting

Model development is a hierarchy of decisions — physical constraints, architecture hypotheses, process parameterizations, property-to-parameter mappings. Naming those decisions explicitly is what makes it possible to ask which of them could be “agentified”. The HWRS 428/528 lecture modules are repeated here from Topic 00 because the syllabus asks you to re-read them with that question in mind.

PrimaryPaper

Deep learning can facilitate physically interpretable geoscientific modelling

Gupta, H. V. (2026) · News & Views, Nature Water

PrimarySlides

L01-M01 · What is a System?

Gupta, H. V. · HWRS 428/528 lecture · 21 slides

PrimarySlides

L01-M02 · What is a Model?

Gupta, H. V. · HWRS 428/528 lecture · 28 slides

PrimarySlides

L02-M03 · Stages in Model Development

Gupta, H. V. · HWRS 428/528 lecture · 13 slides

PrimarySlides

L02-M04 · Main Scientific Hypotheses Encoded in a PB-DESM

Gupta, H. V. · HWRS 428/528 lecture · 34 slides

PrimarySlides

L03-M05 · The Basic Reservoir Model

Gupta, H. V. · HWRS 428/528 lecture · 16 slides

PrimarySlides

L03-M06 · Language & Definitions

Gupta, H. V. · HWRS 428/528 lecture · 4 slides

SupportingPaper

Understanding the information content in the hierarchy of model development decisions

Gharari, S. et al. (2021) · Water Resources Research

SupportingPaper

Towards a comprehensive assessment of model structural adequacy

Gupta, H. V. et al. (2012) · Opinion Paper, Water Resources Research

Topic 03Week 05

Intelligence in Model Training (Parameter Specification)

The IntelliCal agent

Presenting Abdul & Sahar

▶ Recording — Sep 22, 2026 · 3:23 PM

4 primary6 supporting

Calibration as a reasoning task rather than a search task. The new work asks whether an LLM can play the role of the expert hydrologist in multi-step, constraint-aware parameter specification — which is exactly what the classic MACS / manual-automatic hybrid papers were trying to encode by hand.

PrimaryPaper

Towards a reasoning-based physics-informed framework for efficient parameter specification in Earth system modeling

Yan, S. et al. (2026) · Submitted to Nature Water

PrimaryPaper

Large language models as calibration agents in hydrological modeling: feasibility and limitations

Zhu, Y. et al. (2026) · Geophysical Research Letters

PrimaryPaper

AI agent for hydrologic modeling: definition, development and application

Yan, S. et al. (2026) · ESS Open Archive

PrimaryPaper

A constraint-based search algorithm for parameter identification of environmental models

Gharari, S. et al. (2014) · Hydrology and Earth System Sciences

SupportingPaper

Using expert knowledge to increase realism in environmental system models can dramatically reduce the need for calibration

Gharari, S. et al. (2014) · Hydrology and Earth System Sciences

SupportingPaper

HESS Opinions: advocating process modeling and de-emphasizing parameter estimation

Bahremand, A. (2016) · Hydrology and Earth System Sciences

SupportingPaper

A ‘user-friendly’ approach to parameter estimation in hydrologic models

Hogue, T. S. et al. (2006) · Journal of Hydrology (MOPEX special issue)

SupportingPaper

A multi-step automatic calibration scheme (MACS) for river forecasting models

Hogue, T. S. et al. (2000) · Journal of Hydrometeorology

SupportingPaper

Towards improved calibration of hydrologic models: combining the strengths of manual and automatic methods

Boyle, D. P. et al. (2000) · Water Resources Research

SupportingPaper

Status of automatic calibration for hydrologic models: comparison with multilevel expert calibration

Gupta, H. V. et al. (1999) · ASCE Journal of Hydrologic Engineering

Topic 04Week 07

Intelligence in Model Development I

Equation hypothesis generation

Presenting Aldo & Jingxuan

2 primary2 supporting

Can a machine write the equation? Symbolic regression and, more recently, text-generating AI have both been used to distill parameter transfer functions from physio-geographical properties — two very different routes to the same hypothesis-generation problem.

PrimaryPaper

Distilling hydrological and land-surface model parameters from physio-geographical properties using text-generating AI

Feigl, M. et al. (2026) · Nature Water

PrimaryPaper

Symbolic regression for the estimation of transfer functions of hydrological models

Klotz, D. et al. (2017) · Water Resources Research

SupportingPaper

Automatic regionalization of model parameters for hydrological models

Feigl, M. et al. (2022) · Water Resources Research

SupportingPaper

Function space optimization: a symbolic regression method for estimating parameter transfer functions for hydrological models

Feigl, M. et al. (2020) · Water Resources Research

Topic 05Week 10

Intelligence in Model Development II

Architecture hypothesis generation

Presenting Nabin & Jiahui

3 primary4 supporting

One level up from the equations: what structure should the model have at all? Structural adequacy, hydrologic consistency, knowledge graphs of process models, and distillation as a route to generating and testing architectural hypotheses.

PrimaryPaper

Process-model knowledge graph (abstract, in development)

Long, D. et al. (2026) · HVG / TCA working abstract, 08/18/26

PrimaryPaper

Towards a comprehensive assessment of model structural adequacy

Gupta, H. V. et al. (2012) · Opinion Paper, Water Resources Research

PrimaryPaper

Hydrologic consistency as a basis for assessing complexity of monthly water balance models for the continental United States

Martinez, G. F. & Gupta, H. V. (2011) · Water Resources Research

SupportingPaper

Knowledge distillation as a pathway toward next-generation intelligent ecohydrological modeling systems

Jiang, S. et al. (2025) · Nature Water (preprint arXiv:2509.01972)

SupportingPaper

Structure–function coarsening for cross-resolution ecohydrological modeling

Jiang, S. et al. (2026) · Water Resources Research, in review

SupportingPaper

Toward a multi-representational approach to prediction, understanding and discovery in hydrology

de la Fuente, L. A. et al. (2023) · Water Resources Research

SupportingPaper

Framework for Understanding Structural Errors (FUSE): a modular framework to diagnose differences between hydrological models

Clark, M. P. et al. (2008) · Water Resources Research

Topic 06Week 12

Diagnostic Intelligence in Metric Design

What are metrics, anyway?

Presenting Jawad & Ahmad, then Hoshin

4 primary8 supporting

Metrics are descriptions too — of what, exactly? This topic separates training metrics from evaluation/diagnostic metrics, poses the model–metric dual problem, and treats model development as a generative-adversarial process between the two.

PrimaryPaper

Improving model performance by adapting the KGE metric to account for system non-stationarity

Jawad, M. et al. (2026) · Water Resources Research, in review (arXiv)

PrimaryPaper

Decomposition of the mean squared error and NSE performance criteria: implications for improving hydrological modelling

Gupta, H. V. et al. (2009) · Journal of Hydrology

PrimaryPaper

Reconciling theory with observations: towards a diagnostic approach to model evaluation

Gupta, H. V. et al. (2008) · Hydrological Processes

PrimaryPaper

Towards improved calibration of hydrologic models: multiple and non-commensurable measures of information

Gupta, H. V. et al. (1998) · Water Resources Research

SupportingPaper

In defense of metrics: metrics sufficiently encode typical human preferences regarding hydrological model performance

Gauch, M. et al. (2023) · Water Resources Research

SupportingPaper

Mind over metrics: how can we tell if two brains (or AI models) are alike?

Williams, A. (2026) · The Transmitter

SupportingPaper

Comparing expert judgement and numerical criteria for hydrograph evaluation

Crochemore, L. et al. (2014) · Hydrological Sciences Journal

SupportingPaper

On typical range, sensitivity and normalization of mean squared error and Nash–Sutcliffe efficiency type metrics

Gupta, H. V. & Kling, H. (2011) · Technical Note, Water Resources Research

SupportingPaper

A process-based diagnostic approach to model evaluation: application to the NWS distributed hydrologic model

Yilmaz, K. K. et al. (2008) · Water Resources Research

SupportingPaper

The role of hydrograph indices in parameter estimation of rainfall–runoff models

Shamir, E. et al. (2005) · Hydrological Processes

SupportingPaper

Application of temporal streamflow descriptors in hydrologic model parameter estimation

Shamir, E. et al. (2005) · Water Resources Research

SupportingPaper

Towards a comprehensive assessment of model structural adequacy

Gupta, H. V. et al. (2012) · Opinion Paper, Water Resources Research

Topic 07Week 14

Models as Support for Reasoning

Readings to be announced

Presenting Group discussion

TBD

A discussion session. The reading list was still open at the time this archive was assembled — the folders exist but are empty.

No readings have been posted for this topic yet.

Topic 99Reference

Other Resources

ML-augmented interpretable physical-conceptual modeling

0 primary14 supporting

Background library for the group project: the mass-conserving perceptron line of work, interpretable LSTMs, Bayesian structure estimation, and the early neural-network rainfall–runoff papers that started it.

SupportingPaper

Towards CONUS-wide ML-augmented conceptually-interpretable modeling of catchment-scale precipitation–storage–runoff dynamics

Wang, Y. et al. (2026) · Water Resources Research, in review (arXiv:2510.02605)

SupportingPaper

Process-aware AI for rainfall–runoff modeling: a mass-conserving neural framework with hydrological process constraints

Farmani, M. A. et al. (2026) · Water Resources Research, in review (arXiv)

SupportingPaper

Using machine learning to discover parsimonious and physically-interpretable representations of catchment-scale rainfall–runoff dynamics

Wang, Y. & Gupta, H. V. (2025) · Water Resources Research

SupportingPaper

Towards interpretable physical-conceptual catchment-scale hydrological modeling using the mass-conserving perceptron

Wang, Y. & Gupta, H. V. (2024) · Water Resources Research

SupportingPaper

A mass-conserving perceptron for machine-learning-based modeling of geoscientific systems

Wang, Y. & Gupta, H. V. (2024) · Water Resources Research

SupportingPaper

A HydroLSTM-based machine-learning approach to discovering regionalized representations of catchment dynamics

de la Fuente, L. A. et al. (2025) · Water Resources Research

SupportingPaper

Toward interpretable LSTM-based modeling of hydrological systems

de la Fuente, L. A. et al. (2024) · Hydrology and Earth System Sciences

SupportingPaper

Supplement to “Toward interpretable LSTM-based modeling of hydrological systems”

de la Fuente, L. A. et al. (2024) · HESS supplementary material

SupportingPaper

Large-sample hydrology: a need to balance depth with breadth

Gupta, H. V. et al. (2014) · Hydrology and Earth System Sciences

SupportingPaper

Correcting the mathematical structure of a hydrological model via Bayesian data assimilation

Bulygina, N. & Gupta, H. V. (2011) · Water Resources Research

SupportingPaper

How Bayesian data assimilation can be used to estimate the mathematical structure of a model

Bulygina, N. & Gupta, H. V. (2010) · Stochastic Environmental Research and Risk Assessment

SupportingPaper

Estimating the uncertain mathematical structure of a water balance model via Bayesian data assimilation

Bulygina, N. & Gupta, H. V. (2009) · Water Resources Research

SupportingPaper

Self-organizing linear output map (SOLO): an artificial neural network suitable for hydrologic modeling and analysis

Hsu, K.-L. et al. (2002) · Water Resources Research

SupportingPaper

Artificial neural network modeling of the rainfall–runoff process

Hsu, K.-L. et al. (1995) · Water Resources Research